PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00471
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB
Protein Properties Length: 356aa    MW: 39880.7 Da    PI: 4.8514
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00471genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEd++l ++++  G g+W++ ++  g++R++k+c++rw +yl
       AA21G00471 14 RGRWTAEEDQILSNYIQTNGEGSWRSLPKNAGLKRCGKSCRLRWINYL 61
                     8*********************************************97 PP

2Myb_DNA-binding56.37.4e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE+el v+++  lG++ W++Ia++++ gRt++++k++w+++l
       AA21G00471  67 RGNITPEEEELVVKLHSTLGNR-WSLIASYLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.758961IPR017930Myb domain
SuperFamilySSF466895.14E-2911108IPR009057Homeodomain-like
SMARTSM007175.8E-121363IPR001005SANT/Myb domain
PfamPF002491.3E-141461IPR001005SANT/Myb domain
CDDcd001671.06E-81661No hitNo description
PROSITE profilePS5129426.19362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2565116IPR009057Homeodomain-like
SMARTSM007172.8E-1766114IPR001005SANT/Myb domain
PfamPF002496.8E-1667112IPR001005SANT/Myb domain
CDDcd001677.60E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGRAPCCEKI GIKRGRWTAE EDQILSNYIQ TNGEGSWRSL PKNAGLKRCG KSCRLRWINY  60
LRADLKRGNI TPEEEELVVK LHSTLGNRWS LIASYLPGRT DNEIKNYWNS HLSRKLHSFI  120
RKPLISTAVP PPAATRPPAK RRPGRTSRSA MKPKTHNVKT RKTKKNTPIE QNDVVEKALA  180
VSTTENVNEE LMAMELSGGG DNVNINGGEN GVLSFDDDFF DTCLMLDEPD VCHVFASDGF  240
SEFTEMRDSV SNQGLSSGGI TEEFNSSIQS CPSVESFLNY DHMVNETTSD ELIDWDCVWQ  300
TGKNRNVWDE KEGPDSVVSW LLDGDDEAVI GKMNCESLGE PLDLDEENAM VAWLMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397940.11e-161hypothetical protein EUTSA_v10001498mg
SwissprotO222641e-151MYB12_ARATH; Transcription factor MYB12
TrEMBLV4LHW81e-161V4LHW8_EUTSA; Uncharacterized protein
STRINGBra000453.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-143myb domain protein 12